Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905570.1_cds_XP_016455830.1_49722
CDS Infomation

[gene=LOC107779843] [db_xref=GeneID:107779843] [protein=vacuolar-processing enzyme-like] [protein_id=XP_016455830.1] [location=complement(join(44004..44186,44355..44561,46069..46278,46520..46568,47611..47810,47909..47994,49015..49171,49246..49410,50626..50814))] [gbkey=CDS]
Sequence

ATGATTTCGTATGTTGCCGGAATTTTCTTCCTCGTCGGCCTCTCCGTCATCGCCGCCGCC
GCCGGGCGTAATGTTTTGAAACTTCCATCGGAAGCTTCCAGATTCTTCGATGAAGCCGAT
GACTCTGTTGGTACTAGATGGGCCGTCCTTCTTGCCGGATCAAATGGTTATTGGAATTAT
AGACATCAGGCTGATGTATGCCACGCGTATCAGCTGTTGAGAAAAGGTGGTCTCAAAGAT
GAGAATATTATTGTGTTCATGTATGATGACATTGCTTATAATGAAGAGAACCCAAGACAA
GGAGTTATCATTAATAGTCCTGCTGGCGAGGATGTCTACAAAGGAGTCCCTAAGGATTAT
ACTGGAGATGATGTTAATGTGGACAACTTTTTGGCTGTTCTCCTTGGTAACAAAACTGCT
CTTACTGGAGGTAGTGGAAAGGTGGTGGATAGTGGTCCGAATGATCATATTTTCGTATTC
TATAGTGATCATGGTGGCCCTGGGGTGCTTGGGATGCCTACCAATCCCTATCTCTATGCA
AGTGATCTGATTGACGTGTTGAAAAAGAAGCATGCCTCTGGGACATATAAAAGCTTGGTA
CTGTACATTGAAGCTTGTGAGTCCGGAAGTATCTTTGAGGGTCTTCTTCCTAAAGGTCTA
AATATTTATGCCACAACAGCATCAAACGCTGTAGAGAGCAGCTGGGGCACCTATTGTCCT
GGGGACTATCCTAGTCTTCCTCCTGGATATGAGACCTGCCTGGGTGACTTGTATGCTGTT
TCCTGGATGGAGGACAGTGAAATGCACAATTTGCGGACTGAAAATTTGAGGCAGCAGTAT
CACCTGGTCAAACAGAGAACTGCTAATGGAAATTCTGCTTATGGTTCCCATGTCTTGCAA
TTTGGTGATCTACAACTGAGTATGGATTCTCTGTTCATTTATATGGGTACAAATCCTGCA
AATGATAACTACACCTATGTAGATGATAATTCCTTGTGGGCATCATCAAAGGCTGTCAAC
CAGCGTGACGCAGATCTTTTGCATTTCTGGGACAAGTTCCGCAAGGCTCCTGAAGGCTCT
GCTCGGAAAGTTGAAGCTCGGAAACAATTCACTGAAGCTATGTCACACAGAATGCACCTA
GACAACAGCATGGCTCTTGTTGGTAAGCTTCTGTTTGGAATTCAAAAAGGTCCTGAGGTG
CTGAAGCGTGTTCGACCTGTAGGTCAACCTCTTGTTGATGACTGGACCTGCCTAAAATCC
TTTGTAAGAACATTTGAGACACACTGTGGATCGTTATCCCAATATGGAATGAAACACATG
CGATCCATCGCCAATATCTGTAATGATGGAATTAAGATGGAGCAGATGGTGGAGGCATCA
GCACAAGCTTGTCCCAGCGTCCCGTCCAATACTTGGAGTTCCCTCCACAGGGGTTTTAGT
GCATAA

Peptide Sequence

PEP ID

XP_016455830.1
PEP Infomation

PREDICTED: vacuolar-processing enzyme-like [Nicotiana tabacum]
Sequence

MISYVAGIFFLVGLSVIAAAAGRNVLKLPSEASRFFDEADDSVGTRWAVLLAGSNGYWNY
RHQADVCHAYQLLRKGGLKDENIIVFMYDDIAYNEENPRQGVIINSPAGEDVYKGVPKDY
TGDDVNVDNFLAVLLGNKTALTGGSGKVVDSGPNDHIFVFYSDHGGPGVLGMPTNPYLYA
SDLIDVLKKKHASGTYKSLVLYIEACESGSIFEGLLPKGLNIYATTASNAVESSWGTYCP
GDYPSLPPGYETCLGDLYAVSWMEDSEMHNLRTENLRQQYHLVKQRTANGNSAYGSHVLQ
FGDLQLSMDSLFIYMGTNPANDNYTYVDDNSLWASSKAVNQRDADLLHFWDKFRKAPEGS
ARKVEARKQFTEAMSHRMHLDNSMALVGKLLFGIQKGPEVLKRVRPVGQPLVDDWTCLKS
FVRTFETHCGSLSQYGMKHMRSIANICNDGIKMEQMVEASAQACPSVPSNTWSSLHRGFS
A

Transcript Sequence

Gene sequence data has not been registered.